StrainAtlas WGS - SRA

SRX24746756: StrainAtlas WGS
1 ILLUMINA (Illumina NovaSeq 6000) run: 1.1M spots, 344.4M bases, 124Mb downloads

Design: Colony WGS

Submitted by: MIT

Study: A StrainAtlas of the human gut microbiome

A cultured isolate collection from a broad human population

Sample: StrainAtlasProphage_220_8h_treatment

Library:

Name: StrainAtlasProphage_220_8h_treatment

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 1.1M spots, 344.4M bases, 124Mb

Run	# of Spots	# of Bases	Size	Published
SRR29227886	1,148,143	344.4M	124Mb	2024-05-30

Supplemental Content

PREDICTED: Homo sapiens zinc finger protein 618 (ZNF618), transcript variant X29...
PREDICTED: Homo sapiens zinc finger protein 618 (ZNF618), transcript variant X29, mRNA
gi|2462622527|ref|XM_054361924.1|

Nucleotide
protein jagged-2 isoform X3 [Homo sapiens]
protein jagged-2 isoform X3 [Homo sapiens]
gi|2462540133|ref|XP_054231979.1|

Protein
PREDICTED: Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and ...
PREDICTED: Rattus norvegicus hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 (Hsd3b2), transcript variant X6, mRNA
gi|2678917914|ref|XM_063281677.1|

Nucleotide
Arabidopsis thaliana phosphoenolpyruvate carboxylase, putative (DUF506) (AT1G120...
Arabidopsis thaliana phosphoenolpyruvate carboxylase, putative (DUF506) (AT1G12030), mRNA
gi|1063682734|ref|NM_101075.3|

Nucleotide
Mus musculus RIKEN cDNA 1810055G02 gene (1810055G02Rik), transcript variant 4, m...
Mus musculus RIKEN cDNA 1810055G02 gene (1810055G02Rik), transcript variant 4, mRNA
gi|2474083900|ref|NM_001358258.2|

Nucleotide

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SRA